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biology/py-macs3: Update to 3.0.1 

Minor bug fix release
Changes: https://github.com/macs3-project/MACS/releases
This commit is contained in:
Jason W. Bacon 2024-02-28 07:26:03 -06:00
parent 16cd03ef57
commit ddb11fbe97
6 changed files with 18 additions and 23 deletions

4
biology/py-macs3/Makefile
View File

@ -1,6 +1,6 @@
PORTNAME= MACS3
DISTVERSIONPREFIX= v
DISTVERSION= 3.0.0
DISTVERSION= 3.0.1
CATEGORIES= biology python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@ -42,7 +42,7 @@ post-stage:
# FIXME: Some tests fail due to a py-threadpoolctl issue
# https://github.com/joblib/threadpoolctl/pull/148
do-test: deinstall install
do-test: deinstall reinstall
@${RM} -rf ${WRKSRC}/temp
@cd ${WRKSRC}/test && ./cmdlinetest tag

6
biology/py-macs3/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1703890666
SHA256 (macs3-project-MACS-v3.0.0_GH0.tar.gz) = faa7ec2ea1f47b8c4cd747f00f2754d0e40051fe44d81d229d0111e3dad34a1d
SIZE (macs3-project-MACS-v3.0.0_GH0.tar.gz) = 197389439
TIMESTAMP = 1708785426
SHA256 (macs3-project-MACS-v3.0.1_GH0.tar.gz) = 8a2f5b2dccfc255ea2fd5e54e0d6aa9c12f5ce83762b17b779ce2546ade860ce
SIZE (macs3-project-MACS-v3.0.1_GH0.tar.gz) = 197400439

2
biology/py-macs3/files/patch-MACS3_fermi-lite_ksw.c
View File

@ -1,4 +1,4 @@
--- MACS3/fermi-lite/ksw.c.orig 2023-11-15 16:09:23 UTC
--- MACS3/fermi-lite/ksw.c.orig 2024-02-24 15:09:33 UTC
+++ MACS3/fermi-lite/ksw.c
@@ -28,7 +28,7 @@

9
biology/py-macs3/files/patch-pyproject.toml
View File

@ -1,6 +1,7 @@
--- pyproject.toml.orig 2024-01-06 15:00:01 UTC
--- pyproject.toml.orig 2024-02-23 05:43:44 UTC
+++ pyproject.toml
@@ -1,2 +1,2 @@
@@ -1,3 +1,3 @@
[build-system]
-requires=['setuptools>=60.0', 'numpy>=1.19', 'cykhash>=2.0,<3.0', 'Cython~=3.0', 'hmmlearn>=0.3']
+requires=['setuptools>=60.0', 'numpy>=1.19', 'cykhash>=2.0,<3.0', 'Cython>=0', 'hmmlearn>=0.3']
-requires=['setuptools>=60.0', 'numpy>=1.24.2', 'scipy>=1.11.4', 'cykhash>=2.0,<3.0', 'Cython~=3.0', 'scikit-learn>=1.2.1', 'hmmlearn>=0.3']
+requires=['setuptools>=60.0', 'numpy>=1.24.2', 'scipy>=1.11.1', 'cykhash>=2.0,<3.0', 'Cython>=0', 'scikit-learn>=1.2.1', 'hmmlearn>=0.3']

9
biology/py-macs3/files/patch-requirements.txt
View File

@ -1,8 +1,11 @@
--- requirements.txt.orig 2024-01-06 14:55:53 UTC
--- requirements.txt.orig 2024-02-23 05:43:44 UTC
+++ requirements.txt
@@ -1,4 +1,4 @@
@@ -1,6 +1,6 @@
-Cython~=3.0
+Cython>=0
numpy>=1.19
numpy>=1.24.2
-scipy>=1.11.4
+scipy>=1.11.1
scikit-learn>=1.2.1
hmmlearn>=0.3
cykhash>=2.0,<3.0

11
biology/py-macs3/files/patch-setup.py
View File

@ -1,14 +1,5 @@
--- setup.py.orig 2023-11-15 16:09:23 UTC
--- setup.py.orig 2024-02-24 14:39:02 UTC
+++ setup.py
@@ -40,7 +40,7 @@ classifiers =[\
install_requires = [ "numpy>=1.19",
"hmmlearn>=0.3",
"cykhash>=2.0,<3.0",
- "Cython~=3.0" ]
+ "Cython>=0" ]
tests_requires = [ 'pytest' ]
@@ -70,7 +70,7 @@ def main():
if not clang: