From 3c62a68368545af4239ba09752fe854f3a31f96e Mon Sep 17 00:00:00 2001 From: "Jason W. Bacon" Date: Wed, 4 Jun 2025 08:22:26 -0500 Subject: [PATCH] biology/samtools: Update to 1.22 Numerous fixes and enhancements Changes: https://github.com/samtools/samtools/releases Update by: Hayzam Sherif Reported by: portscout --- biology/samtools/Makefile | 4 ++-- biology/samtools/distinfo | 6 +++--- biology/samtools/pkg-plist | 1 + 3 files changed, 6 insertions(+), 5 deletions(-) diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile index 496dfc8af2a1..f0ce1807eecd 100644 --- a/biology/samtools/Makefile +++ b/biology/samtools/Makefile @@ -1,5 +1,5 @@ PORTNAME= samtools -DISTVERSION= 1.21 +DISTVERSION= 1.22 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -9,7 +9,7 @@ WWW= https://www.htslib.org/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= htslib>=1.21:biology/htslib +BUILD_DEPENDS= htslib>=1.22:biology/htslib LIB_DEPENDS= libhts.so:biology/htslib TEST_DEPENDS= bash:shells/bash diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo index 867f9408bd11..69760896c894 100644 --- a/biology/samtools/distinfo +++ b/biology/samtools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1727437810 -SHA256 (samtools-samtools-1.21_GH0.tar.gz) = b327b85d3d60771ede370c8bcae0570e7704da39abddfe8e930a85b80aabffac -SIZE (samtools-samtools-1.21_GH0.tar.gz) = 5682709 +TIMESTAMP = 1748951307 +SHA256 (samtools-samtools-1.22_GH0.tar.gz) = dbe62a97d19634a930033ce302b340a5109263efc371b83481182385a98bcdda +SIZE (samtools-samtools-1.22_GH0.tar.gz) = 5742299 diff --git a/biology/samtools/pkg-plist b/biology/samtools/pkg-plist index 2ef37918b44f..f841e6b58a07 100644 --- a/biology/samtools/pkg-plist +++ b/biology/samtools/pkg-plist @@ -26,6 +26,7 @@ share/man/man1/samtools-ampliconstats.1.gz share/man/man1/samtools-bedcov.1.gz share/man/man1/samtools-calmd.1.gz share/man/man1/samtools-cat.1.gz +share/man/man1/samtools-checksum.1.gz share/man/man1/samtools-collate.1.gz share/man/man1/samtools-consensus.1.gz share/man/man1/samtools-coverage.1.gz