PORTNAME=	coverm
DISTVERSIONPREFIX=	v
DISTVERSION=	0.7.0
PORTREVISION=	3
CATEGORIES=	biology

MAINTAINER=	yuri@FreeBSD.org
COMMENT=	Read coverage calculator for metagenomics
WWW=		https://github.com/wwood/CoverM

LICENSE=	AGPLv3
LICENSE_FILE=	${WRKSRC}/LICENCE.txt

BROKEN_aarch64=	compilation fails, see https://github.com/wwood/CoverM/issues/234
BROKEN_i386=	compilation fails, see https://github.com/wwood/CoverM/issues/227

USES=		cargo

USE_GITHUB=	yes
GH_ACCOUNT=	wwood
GH_PROJECT=	CoverM

CARGO_CRATES=	addr2line-0.24.2 \
		adler2-2.0.0 \
		aho-corasick-1.1.3 \
		ansi_term-0.12.1 \
		anstream-0.6.15 \
		anstyle-1.0.8 \
		anstyle-parse-0.2.5 \
		anstyle-query-1.1.1 \
		anstyle-wincon-3.0.4 \
		anyhow-1.0.89 \
		approx-0.5.1 \
		assert_cli-0.6.3 \
		atty-0.2.14 \
		autocfg-1.4.0 \
		backtrace-0.3.74 \
		bincode-1.3.3 \
		bio-1.6.0 \
		bio-types-1.0.4 \
		bird_tool_utils-0.5.1 \
		bird_tool_utils-man-0.4.0 \
		bit-set-0.5.3 \
		bit-vec-0.5.1 \
		bit-vec-0.6.3 \
		bitflags-1.3.2 \
		bitflags-2.6.0 \
		buf_redux-0.8.4 \
		buffer-redux-1.0.2 \
		bv-0.11.1 \
		bytecount-0.6.8 \
		bytemuck-1.18.0 \
		byteorder-1.5.0 \
		bzip2-0.4.4 \
		bzip2-sys-0.1.11+1.0.8 \
		capnp-0.14.11 \
		cargo-husky-1.5.0 \
		cc-1.1.24 \
		cfg-if-1.0.0 \
		checkm-0.2.0 \
		clap-3.2.25 \
		clap-4.5.19 \
		clap_builder-4.5.19 \
		clap_complete-4.5.32 \
		clap_lex-0.2.4 \
		clap_lex-0.7.2 \
		cmake-0.1.51 \
		colorchoice-1.0.2 \
		colored-1.9.4 \
		concurrent-queue-2.5.0 \
		crc32fast-1.4.2 \
		crossbeam-deque-0.8.5 \
		crossbeam-epoch-0.9.18 \
		crossbeam-utils-0.8.20 \
		csv-1.3.0 \
		csv-core-0.1.11 \
		custom_derive-0.1.7 \
		derive-new-0.5.9 \
		derive-new-0.6.0 \
		difference-2.0.0 \
		disjoint-0.8.0 \
		editdistancek-1.0.2 \
		either-1.13.0 \
		enum-map-2.7.3 \
		enum-map-derive-0.17.0 \
		env_filter-0.1.2 \
		env_logger-0.10.2 \
		env_logger-0.11.5 \
		environment-0.1.1 \
		equivalent-1.0.1 \
		errno-0.3.9 \
		failure-0.1.8 \
		failure_derive-0.1.8 \
		fastrand-1.9.0 \
		fastrand-2.1.1 \
		feature-probe-0.1.1 \
		finch-0.6.0 \
		fixedbitset-0.4.2 \
		flate2-1.0.34 \
		form_urlencoded-1.2.1 \
		fs-utils-1.1.4 \
		fuchsia-cprng-0.1.1 \
		fxhash-0.2.1 \
		galah-0.4.2 \
		gbdt-0.1.3 \
		gcollections-1.5.0 \
		getrandom-0.2.15 \
		gimli-0.31.1 \
		glob-0.3.1 \
		hashbrown-0.12.3 \
		hashbrown-0.15.0 \
		heck-0.4.1 \
		heck-0.5.0 \
		hermit-abi-0.1.19 \
		hermit-abi-0.4.0 \
		home-0.5.9 \
		hts-sys-2.1.4 \
		humantime-2.1.0 \
		idna-0.5.0 \
		ieee754-0.2.6 \
		indexmap-1.9.3 \
		indexmap-2.6.0 \
		instant-0.1.13 \
		intervallum-1.4.1 \
		is-terminal-0.4.13 \
		is_terminal_polyfill-1.70.1 \
		itertools-0.11.0 \
		itertools-num-0.1.3 \
		itoa-1.0.11 \
		jobserver-0.1.32 \
		lazy_static-1.5.0 \
		libc-0.2.159 \
		libm-0.2.8 \
		libz-sys-1.1.20 \
		linear-map-1.2.0 \
		linux-raw-sys-0.4.14 \
		log-0.4.22 \
		lzma-sys-0.1.20 \
		matrixmultiply-0.3.9 \
		memchr-2.7.4 \
		memmap-0.7.0 \
		memoffset-0.7.1 \
		miniz_oxide-0.8.0 \
		multimap-0.9.1 \
		murmurhash3-0.0.5 \
		nalgebra-0.29.0 \
		nalgebra-0.32.6 \
		nalgebra-macros-0.1.0 \
		nalgebra-macros-0.2.2 \
		ndarray-0.15.6 \
		needletail-0.4.1 \
		needletail-0.5.1 \
		newtype_derive-0.1.6 \
		nix-0.26.4 \
		num-complex-0.4.6 \
		num-integer-0.1.46 \
		num-rational-0.4.2 \
		num-traits-0.2.19 \
		object-0.36.5 \
		once_cell-1.20.1 \
		ordered-float-3.9.2 \
		os_str_bytes-6.6.1 \
		partitions-0.2.4 \
		paste-1.0.15 \
		percent-encoding-2.3.1 \
		petgraph-0.6.5 \
		pin-utils-0.1.0 \
		pkg-config-0.3.31 \
		portable-atomic-1.9.0 \
		ppv-lite86-0.2.20 \
		proc-macro2-1.0.86 \
		quick-error-1.2.3 \
		quote-1.0.37 \
		rand-0.4.6 \
		rand-0.8.5 \
		rand_chacha-0.3.1 \
		rand_core-0.3.1 \
		rand_core-0.4.2 \
		rand_core-0.6.4 \
		rand_distr-0.4.3 \
		rawpointer-0.2.1 \
		rayon-1.10.0 \
		rayon-core-1.12.1 \
		rdrand-0.4.0 \
		redox_syscall-0.1.57 \
		regex-1.11.0 \
		regex-automata-0.4.8 \
		regex-syntax-0.8.5 \
		remove_dir_all-0.5.3 \
		roff-0.1.0 \
		roff-0.2.2 \
		rust-htslib-0.44.1 \
		rust-lapper-1.1.0 \
		rustc-demangle-0.1.24 \
		rustc_version-0.1.7 \
		rustix-0.38.37 \
		rustversion-1.0.17 \
		ryu-1.0.18 \
		safe_arch-0.7.2 \
		safemem-0.3.3 \
		semver-0.1.20 \
		serde-1.0.210 \
		serde_derive-1.0.210 \
		serde_json-1.0.128 \
		shlex-1.3.0 \
		simba-0.6.0 \
		simba-0.8.1 \
		simple-logging-2.0.2 \
		skani-0.1.1 \
		smallvec-1.13.2 \
		statrs-0.16.1 \
		statrs-0.17.1 \
		strsim-0.10.0 \
		strsim-0.11.1 \
		strum-0.25.0 \
		strum_macros-0.25.3 \
		strum_macros-0.26.4 \
		syn-1.0.109 \
		syn-2.0.79 \
		synstructure-0.12.6 \
		tempdir-0.3.7 \
		tempfile-3.13.0 \
		termcolor-1.4.1 \
		textwrap-0.16.1 \
		thiserror-1.0.64 \
		thiserror-impl-1.0.64 \
		thread-id-3.3.0 \
		tikv-jemalloc-sys-0.6.0+5.3.0-1-ge13ca993e8ccb9ba9847cc330696e02839f328f7 \
		tikv-jemallocator-0.6.0 \
		tinyvec-1.8.0 \
		tinyvec_macros-0.1.1 \
		trilean-1.1.0 \
		triple_accel-0.4.0 \
		typenum-1.17.0 \
		unicode-bidi-0.3.17 \
		unicode-ident-1.0.13 \
		unicode-normalization-0.1.24 \
		unicode-xid-0.2.6 \
		url-2.5.2 \
		utf8parse-0.2.2 \
		vcpkg-0.2.15 \
		vec_map-0.8.2 \
		version-compare-0.1.1 \
		version-compare-0.2.0 \
		wasi-0.11.0+wasi-snapshot-preview1 \
		which-6.0.3 \
		wide-0.7.28 \
		winapi-0.3.9 \
		winapi-i686-pc-windows-gnu-0.4.0 \
		winapi-util-0.1.9 \
		winapi-x86_64-pc-windows-gnu-0.4.0 \
		windows-sys-0.52.0 \
		windows-sys-0.59.0 \
		windows-targets-0.52.6 \
		windows_aarch64_gnullvm-0.52.6 \
		windows_aarch64_msvc-0.52.6 \
		windows_i686_gnu-0.52.6 \
		windows_i686_gnullvm-0.52.6 \
		windows_i686_msvc-0.52.6 \
		windows_x86_64_gnu-0.52.6 \
		windows_x86_64_gnullvm-0.52.6 \
		windows_x86_64_msvc-0.52.6 \
		winsafe-0.0.19 \
		xz2-0.1.7 \
		zerocopy-0.7.35 \
		zerocopy-derive-0.7.35

PLIST_FILES=	bin/${PORTNAME}

post-install:
	@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/${PORTNAME}

.include <bsd.port.mk>
